Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Gene tree coverage and Gene QC (per species)
Quick links: Nematoda, Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Crustacea, Myriapoda, Chelicerata, Tardigrada, Priapulida, Acanthocephala, Annelida, Brachiopoda, Mollusca, Nemertea, Platyhelminthes, Rotifera, Echinodermata, Cephalochordata, Hemichordata, Acoelomorpha, Cnidaria, Ctenophora, Placozoa, Porifera, Metazoa
Favourite species
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Caenorhabditis elegans strain N2 | 19985 | 14549 | 5436 | 5584 | 8965 | 5981 | 0 | 0 | 0 | ||
| Drosophila melanogaster | 13943 | 11489 | 2454 | 868 | 10621 | 2287 | 0 | 0 | 0 |
Nematoda
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Loa loa strain Cameroon SouthWest Province isolate | 14908 | 8666 | 6242 | 1141 | 7525 | 1378 | 0 | 0 | 0 | ||
| Caenorhabditis elegans strain N2 | 19985 | 14549 | 5436 | 5584 | 8965 | 5981 | 0 | 0 | 0 |
Coleoptera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Tribolium madens strain multiple individuals | 12117 | 10999 | 1118 | 527 | 10472 | 1633 | 0 | 0 | 0 |
Diptera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Anopheles darlingi | 11199 | 10351 | 848 | 318 | 10033 | 1419 | 0 | 0 | 0 | ||
| Drosophila melanogaster | 13943 | 11489 | 2454 | 868 | 10621 | 2287 | 0 | 0 | 0 |
Hemiptera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Halyomorpha halys isolate HHAL.00 | 12874 | 11340 | 1534 | 1030 | 10310 | 2749 | 0 | 0 | 0 |
Hymenoptera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Apis dorsata | 9935 | 8745 | 1190 | 128 | 8617 | 370 | 0 | 0 | 0 |
Lepidoptera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Spodoptera frugiperda strain SF20-4 | 14546 | 13802 | 744 | 456 | 13346 | 2092 | 0 | 0 | 0 | ||
| Cydia pomonella isolate Wapato2018A | 16452 | 15594 | 858 | 793 | 14801 | 3445 | 0 | 0 | 0 |
Crustacea
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Amphibalanus amphitrite strain SeventyFive | 27268 | 26410 | 858 | 2275 | 24135 | 13004 | 0 | 0 | 0 | ||
| Homarus americanus strain GMGI-L3 | 21200 | 19310 | 1890 | 878 | 18432 | 2433 | 0 | 0 | 0 | ||
| Hyalella azteca isolate HAZT.00-mixed | 16327 | 14163 | 2164 | 1783 | 12380 | 3346 | 0 | 0 | 0 | ||
| Penaeus monodon strain SGIC_2016 | 19268 | 17471 | 1797 | 304 | 17167 | 2692 | 0 | 0 | 0 | ||
| Daphnia pulex strain KAP4 | 15266 | 15009 | 257 | 74 | 14935 | 859 | 0 | 0 | 0 | ||
| Tigriopus californicus strain San Diego | 15577 | 12800 | 2777 | 1043 | 11757 | 1908 | 0 | 0 | 0 | ||
| Pollicipes pollicipes isolate AB1234 | 19135 | 18093 | 1042 | 592 | 17501 | 6434 | 0 | 0 | 0 | ||
| Eurytemora carolleeae | 19382 | 14893 | 4489 | 1519 | 13374 | 3072 | 0 | 0 | 0 | ||
| Homarus gammarus reference strain | 23223 | 20478 | 2745 | 1645 | 18833 | 2919 | 0 | 0 | 0 | ||
| Penaeus chinensis | 19640 | 18506 | 1134 | 108 | 18398 | 1601 | 0 | 0 | 0 | ||
| Daphnia magna strain NIES | 16333 | 15763 | 570 | 1017 | 14746 | 3656 | 0 | 0 | 0 | ||
| Penaeus japonicus strain Ginoza2017 | 21130 | 19870 | 1260 | 314 | 19556 | 2696 | 0 | 0 | 0 | ||
| Penaeus vannamei isolate JL-2024 | 21965 | 20280 | 1685 | 489 | 19791 | 3597 | 0 | 0 | 0 | ||
| Procambarus clarkii isolate CNS0578487 | 36577 | 34741 | 1836 | 5991 | 28750 | 15017 | 0 | 0 | 0 | ||
| Lepeophtheirus salmonis | 13058 | 11947 | 1111 | 732 | 11215 | 2330 | 0 | 0 | 0 | ||
| Portunus trituberculatus strain SZX2019 | 16145 | 14798 | 1347 | 827 | 13971 | 2319 | 0 | 0 | 0 | ||
| Daphnia pulicaria strain SC F1-1A | 16837 | 16470 | 367 | 175 | 16295 | 1746 | 0 | 0 | 0 |
Myriapoda
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Strigamia maritima | 14992 | 12190 | 2802 | 1754 | 10436 | 3128 | 0 | 0 | 0 |
Chelicerata
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Limulus polyphemus | 22636 | 20897 | 1739 | 949 | 19948 | 8713 | 0 | 0 | 0 | ||
| Ixodes scapularis strain PalLabHiFi | 26370 | 24842 | 1528 | 6241 | 18601 | 13976 | 0 | 0 | 0 |
Tardigrada
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Hypsibius exemplaris strain Z151 | 19912 | 15633 | 4279 | 3277 | 12356 | 4825 | 0 | 0 | 0 | ||
| Paramacrobiotus metropolitanus strain TYO | 20080 | 18245 | 1835 | 4920 | 13325 | 7496 | 0 | 0 | 0 |
Priapulida
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Priapulus caudatus | 13786 | 11771 | 2015 | 531 | 11240 | 1840 | 0 | 0 | 0 |
Acanthocephala
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Pomphorhynchus laevis strain GPI110 | 12043 | 8127 | 3916 | 3264 | 4863 | 3379 | 0 | 0 | 0 |
Annelida
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Helobdella robusta | 23432 | 17009 | 6423 | 4560 | 12449 | 6418 | 0 | 0 | 0 | ||
| Dimorphilus gyrociliatus | 14030 | 11724 | 2306 | 1183 | 10541 | 2159 | 0 | 0 | 0 | ||
| Owenia fusiformis | 26627 | 22951 | 3676 | 4448 | 18503 | 7818 | 0 | 0 | 0 |
Brachiopoda
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lingula anatina strain Amm_Jpn | 26158 | 24386 | 1772 | 2554 | 21832 | 9746 | 0 | 0 | 0 |
Mollusca
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Haliotis rubra strain DU_JTF1 | 28504 | 26891 | 1613 | 453 | 26438 | 5611 | 0 | 0 | 0 | ||
| Biomphalaria glabrata | 21972 | 20024 | 1948 | 3215 | 16809 | 6215 | 0 | 0 | 0 | ||
| Octopus bimaculoides strain UCB-OBI-ISO-001 | 15656 | 14043 | 1613 | 724 | 13319 | 2900 | 0 | 0 | 0 | ||
| Gigantopelta aegis strain Gae_Host | 22179 | 20826 | 1353 | 1567 | 19259 | 4995 | 0 | 0 | 0 | ||
| Lottia gigantea | 23340 | 20451 | 2889 | 3471 | 16980 | 5208 | 0 | 0 | 0 | ||
| Magallana gigas | 25932 | 24404 | 1528 | 3155 | 21249 | 8601 | 0 | 0 | 0 | ||
| Haliotis rufescens strain VD_foot | 31163 | 29899 | 1264 | 838 | 29061 | 6665 | 0 | 0 | 0 | ||
| Mizuhopecten yessoensis strain PY_sf001 | 24474 | 22435 | 2039 | 1980 | 20455 | 5694 | 0 | 0 | 0 |
Nemertea
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineus longissimus reference strain | 19782 | 16604 | 3178 | 1874 | 14730 | 3267 | 0 | 0 | 0 |
Platyhelminthes
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Echinococcus granulosus | 11319 | 6913 | 4406 | 690 | 6223 | 910 | 0 | 0 | 0 | ||
| Schistosoma mansoni | 10144 | 8362 | 1782 | 699 | 7663 | 1500 | 0 | 0 | 0 |
Rotifera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adineta vaga | 49300 | 41710 | 7590 | 14002 | 27708 | 28118 | 0 | 0 | 0 |
Echinodermata
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Acanthaster planci | 16407 | 15677 | 730 | 400 | 15277 | 2360 | 0 | 0 | 0 | ||
| Asterias rubens | 14064 | 13693 | 371 | 126 | 13567 | 1749 | 0 | 0 | 0 | ||
| Lytechinus variegatus strain NC3 | 22472 | 22118 | 354 | 211 | 21907 | 4645 | 0 | 0 | 0 | ||
| Lytechinus pictus isolate F3 Inbred | 20034 | 19514 | 520 | 98 | 19416 | 1951 | 0 | 0 | 0 | ||
| Strongylocentrotus purpuratus strain Spur 01 | 26947 | 26309 | 638 | 727 | 25582 | 9336 | 0 | 0 | 0 | ||
| Anneissia japonica strain Jap-2015-1 | 20184 | 18418 | 1766 | 1973 | 16445 | 5288 | 0 | 0 | 0 |
Cephalochordata
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Branchiostoma lanceolatum | 35955 | 29416 | 6539 | 5295 | 24121 | 13010 | 0 | 0 | 0 |
Hemichordata
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Saccoglossus kowalevskii | 20561 | 18758 | 1803 | 1067 | 17691 | 4778 | 0 | 0 | 0 |
Acoelomorpha
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Hofstenia miamia strain MS-H3 | 22454 | 17554 | 4900 | 6376 | 11178 | 7980 | 0 | 0 | 0 |
Cnidaria
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Actinia equina strain AE1 | 47671 | 41511 | 6160 | 7020 | 34491 | 20535 | 0 | 0 | 0 | ||
| Dendronephthya gigantea strain DGI-Jeju-01 | 21864 | 20699 | 1165 | 1871 | 18828 | 7842 | 0 | 0 | 0 | ||
| Stylophora pistillata isolate CSM Monaco | 23071 | 22115 | 956 | 470 | 21645 | 4431 | 0 | 0 | 0 | ||
| Clytia hemisphaerica strain Z4C2 | 19128 | 16402 | 2726 | 3433 | 12969 | 5312 | 0 | 0 | 0 | ||
| Orbicella faveolata strain FL | 25858 | 24481 | 1377 | 524 | 23957 | 5345 | 0 | 0 | 0 | ||
| Thelohanellus kitauei | 15020 | 9270 | 5750 | 5875 | 3395 | 5665 | 0 | 0 | 0 | ||
| Exaiptasia diaphana strain CC7 | 9194 | 8542 | 652 | 237 | 8305 | 1563 | 0 | 0 | 0 | ||
| Nematostella vectensis | 19174 | 18491 | 683 | 496 | 17995 | 3378 | 0 | 0 | 0 | ||
| Acropora millepora strain JS-1 | 29608 | 28817 | 791 | 1395 | 27422 | 11013 | 0 | 0 | 0 | ||
| Hydra vulgaris | 22693 | 21648 | 1045 | 3434 | 18214 | 10844 | 0 | 0 | 0 |
Ctenophora
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mnemiopsis leidyi | 16058 | 11264 | 4794 | 3011 | 8253 | 3693 | 0 | 0 | 0 |
Placozoa
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Trichoplax adhaerens strain Grell-BS-1999 | 11520 | 10096 | 1424 | 574 | 9522 | 2216 | 0 | 0 | 0 |
Porifera
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Halichondria panicea | 17209 | 16092 | 1117 | 2868 | 13224 | 6727 | 0 | 0 | 0 | ||
| Amphimedon queenslandica | 20111 | 18414 | 1697 | 4559 | 13855 | 8407 | 0 | 0 | 0 |
Metazoa
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gordionus sp. m RMFG-2023 | 8316 | 7163 | 1153 | 924 | 6239 | 1940 | 0 | 0 | 0 |
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