Statistics on protein trees

The protein tree pipeline is described at the following page.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Homarus americanus strain GMGI-L3

Homarus gammarus reference strain

Procambarus clarkii isolate CNS0578487

Portunus trituberculatus strain SZX2019

Penaeus chinensis

Penaeus japonicus strain Ginoza2017

Penaeus monodon strain SGIC_2016

Penaeus vannamei isolate JL-2024

Hyalella azteca isolate HAZT.00-mixed

Lepeophtheirus salmonis

Tigriopus californicus strain San Diego

Eurytemora carolleeae

Amphibalanus amphitrite strain SeventyFive

Pollicipes pollicipes isolate AB1234

Daphnia magna strain NIES

Daphnia pulex strain KAP4

Daphnia pulicaria strain SC F1-1A

Anopheles darlingi

Drosophila melanogaster

Cydia pomonella isolate Wapato2018A

Spodoptera frugiperda strain SF20-4

Apis dorsata

Tribolium madens strain multiple individuals

Halyomorpha halys isolate HHAL.00

Strigamia maritima

Ixodes scapularis strain PalLabHiFi

Limulus polyphemus

Hypsibius exemplaris strain Z151

Paramacrobiotus metropolitanus strain TYO

Caenorhabditis elegans strain N2

Loa loa strain Cameroon SouthWest Province isolate

Gordionus sp. m RMFG-2023

Priapulus caudatus

Haliotis rubra strain DU_JTF1

Haliotis rufescens strain VD_foot

Biomphalaria glabrata

Gigantopelta aegis strain Gae_Host

Lottia gigantea

Magallana gigas

Mizuhopecten yessoensis strain PY_sf001

Octopus bimaculoides strain UCB-OBI-ISO-001

Dimorphilus gyrociliatus

Owenia fusiformis

Helobdella robusta

Echinococcus granulosus

Schistosoma mansoni

Lineus longissimus reference strain

Lingula anatina strain Amm_Jpn

Pomphorhynchus laevis strain GPI110

Adineta vaga

Lytechinus pictus isolate F3 Inbred

Lytechinus variegatus strain NC3

Strongylocentrotus purpuratus strain Spur 01

Acanthaster planci

Asterias rubens

Anneissia japonica strain Jap-2015-1

Branchiostoma lanceolatum

Saccoglossus kowalevskii

Hofstenia miamia strain MS-H3

Acropora millepora strain JS-1

Stylophora pistillata isolate CSM Monaco

Orbicella faveolata strain FL

Actinia equina strain AE1

Exaiptasia diaphana strain CC7

Nematostella vectensis

Dendronephthya gigantea strain DGI-Jeju-01

Clytia hemisphaerica strain Z4C2

Hydra vulgaris

Thelohanellus kitauei

Mnemiopsis leidyi

Trichoplax adhaerens strain Grell-BS-1999

Amphimedon queenslandica

Halichondria panicea